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["Table S1 Features of each chloroplast protein-coding genes in analysis of polyploid and its diploid relatives."]
["gene","Conserved sites","Variable sites","Parsimony informative sites","Total sites","V/T a","P/T b"]
["atpA",1497,18,7,1515,{"v":0.011881188118811881,"d":"0.0119"},{"v":0.0046204620462046205,"d":"0.0046"}]
["atpB",1484,13,6,1497,{"v":0.008684034736138945,"d":"0.0087"},{"v":0.004008016032064128,"d":"0.0040"}]
["atpE",410,4,1,414,{"v":0.00966183574879227,"d":"0.0097"},{"v":0.0024154589371980675,"d":"0.0024"}]
["atpF",560,7,2,567,{"v":0.012345679012345678,"d":"0.0123"},{"v":0.003527336860670194,"d":"0.0035"}]
["atpH",245,1,1,246,{"v":0.0040650406504065045,"d":"0.0041"},{"v":0.0040650406504065045,"d":"0.0041"}]
["atpI",737,7,4,744,{"v":0.009408602150537635,"d":"0.0094"},{"v":0.005376344086021506,"d":"0.0054"}]
["ccsA",946,23,9,975,{"v":0.02358974358974359,"d":"0.0236"},{"v":0.009230769230769232,"d":"0.0092"}]
["cemA",683,10,3,693,{"v":0.01443001443001443,"d":"0.0144"},{"v":0.004329004329004329,"d":"0.0043"}]
["clpP",643,8,3,651,{"v":0.01228878648233487,"d":"0.0123"},{"v":0.004608294930875576,"d":"0.0046"}]
["infA",336,6,2,342,{"v":0.017543859649122806,"d":"0.0175"},{"v":0.005847953216374269,"d":"0.0058"}]
["matK",1490,49,22,1539,{"v":0.03183885640025991,"d":"0.0318"},{"v":0.014294996751137101,"d":"0.0143"}]
["ndhA",1057,32,7,1089,{"v":0.02938475665748393,"d":"0.0294"},{"v":0.006427915518824609,"d":"0.0064"}]
["ndhB",1530,3,2,1533,{"v":0.0019569471624266144,"d":"0.0020"},{"v":0.001304631441617743,"d":"0.0013"}]
["ndhC",359,4,2,363,{"v":0.011019283746556474,"d":"0.0110"},{"v":0.005509641873278237,"d":"0.0055"}]
["ndhD",1485,18,3,1503,{"v":0.011976047904191617,"d":"0.0120"},{"v":0.001996007984031936,"d":"0.0020"}]
["ndhE",303,3,2,306,{"v":0.00980392156862745,"d":"0.0098"},{"v":0.006535947712418301,"d":"0.0065"}]
["ndhF",2158,62,20,2220,{"v":0.027927927927927927,"d":"0.0279"},{"v":0.009009009009009009,"d":"0.0090"}]
["ndhG",525,6,2,531,{"v":0.011299435028248588,"d":"0.0113"},{"v":0.003766478342749529,"d":"0.0038"}]
["ndhH",489,17,9,506,{"v":0.03359683794466403,"d":"0.0336"},{"v":0.017786561264822136,"d":"0.0178"}]
["ndhI",539,4,2,546,{"v":0.007326007326007326,"d":"0.0073"},{"v":0.003663003663003663,"d":"0.0037"}]
["ndhJ",476,4,2,480,{"v":0.008333333333333333,"d":"0.0083"},{"v":0.004166666666666667,"d":"0.0042"}]
["ndhK",732,6,3,738,{"v":0.008130081300813009,"d":"0.0081"},{"v":0.0040650406504065045,"d":"0.0041"}]
["petA",950,13,4,963,{"v":0.013499480789200415,"d":"0.0135"},{"v":0.004153686396677051,"d":"0.0042"}]
["petB",642,6,3,648,{"v":0.009259259259259259,"d":"0.0093"},{"v":0.004629629629629629,"d":"0.0046"}]
["petD",484,5,4,489,{"v":0.010224948875255624,"d":"0.0102"},{"v":0.0081799591002045,"d":"0.0082"}]
["petG",114,0,0,114,{"v":0,"d":"0.0000"},{"v":0,"d":"0.0000"}]
["petL",93,3,2,96,{"v":0.03125,"d":"0.0313"},{"v":0.020833333333333332,"d":"0.0208"}]
["petN",90,0,0,90,{"v":0,"d":"0.0000"},{"v":0,"d":"0.0000"}]
["psaA",2230,23,6,2253,{"v":0.010208610741233911,"d":"0.0102"},{"v":0.002663115845539281,"d":"0.0027"}]
["psaB",2188,17,5,2205,{"v":0.007709750566893424,"d":"0.0077"},{"v":0.0022675736961451248,"d":"0.0023"}]
["psaC",242,4,3,246,{"v":0.016260162601626018,"d":"0.0163"},{"v":0.012195121951219513,"d":"0.0122"}]
["psaI",109,2,1,111,{"v":0.018018018018018018,"d":"0.0180"},{"v":0.009009009009009009,"d":"0.0090"}]
["psaJ",128,1,0,129,{"v":0.007751937984496124,"d":"0.0078"},{"v":0,"d":"0.0000"}]
["psbA",868,11,4,879,{"v":0.012514220705346985,"d":"0.0125"},{"v":0.004550625711035267,"d":"0.0046"}]
["psbB",1522,5,2,1527,{"v":0.0032743942370661427,"d":"0.0033"},{"v":0.0013097576948264572,"d":"0.0013"}]
["psbC",1407,15,2,1422,{"v":0.010548523206751054,"d":"0.0105"},{"v":0.0014064697609001407,"d":"0.0014"}]
["psbD",1052,10,5,1062,{"v":0.009416195856873822,"d":"0.0094"},{"v":0.004708097928436911,"d":"0.0047"}]
["psbE",251,1,0,252,{"v":0.003968253968253968,"d":"0.0040"},{"v":0,"d":"0.0000"}]
["psbF",120,0,0,120,{"v":0,"d":"0.0000"},{"v":0,"d":"0.0000"}]
["psbH",221,1,0,222,{"v":0.0045045045045045045,"d":"0.0045"},{"v":0,"d":"0.0000"}]
["psbI",110,1,0,111,{"v":0.009009009009009009,"d":"0.0090"},{"v":0,"d":"0.0000"}]
["psbJ",121,2,0,123,{"v":0.016260162601626018,"d":"0.0163"},{"v":0,"d":"0.0000"}]
["psbK",185,1,0,186,{"v":0.005376344086021506,"d":"0.0054"},{"v":0,"d":"0.0000"}]
["psbL",115,2,1,117,{"v":0.017094017094017096,"d":"0.0171"},{"v":0.008547008547008548,"d":"0.0085"}]
["psbM",102,3,1,105,{"v":0.02857142857142857,"d":"0.0286"},{"v":0.009523809523809525,"d":"0.0095"}]
["psbN",132,0,0,132,{"v":0,"d":"0.0000"},{"v":0,"d":"0.0000"}]
["psbT",116,1,1,117,{"v":0.008547008547008548,"d":"0.0085"},{"v":0.008547008547008548,"d":"0.0085"}]
["psbZ",187,2,1,189,{"v":0.010582010582010581,"d":"0.0106"},{"v":0.005291005291005291,"d":"0.0053"}]
["rbcL",1408,26,18,1438,{"v":0.01808066759388039,"d":"0.0181"},{"v":0.012517385257301807,"d":"0.0125"}]
["rpl2",822,3,0,825,{"v":0.0036363636363636364,"d":"0.0036"},{"v":0,"d":"0.0000"}]
["rpl14",369,3,1,372,{"v":0.008064516129032258,"d":"0.0081"},{"v":0.002688172043010753,"d":"0.0027"}]
["rpl16",409,2,0,412,{"v":0.0048543689320388345,"d":"0.0049"},{"v":0,"d":"0.0000"}]
["rpl20",358,2,1,360,{"v":0.005555555555555556,"d":"0.0056"},{"v":0.002777777777777778,"d":"0.0028"}]
["rpl22",429,21,9,469,{"v":0.04477611940298507,"d":"0.0448"},{"v":0.019189765458422176,"d":"0.0192"}]
["rpl23",282,0,0,282,{"v":0,"d":"0.0000"},{"v":0,"d":"0.0000"}]
["rpl32",186,6,2,196,{"v":0.030612244897959183,"d":"0.0306"},{"v":0.01020408163265306,"d":"0.0102"}]
["rpl33",199,2,0,201,{"v":0.009950248756218905,"d":"0.0100"},{"v":0,"d":"0.0000"}]
["rpl36",113,1,1,114,{"v":0.008771929824561403,"d":"0.0088"},{"v":0.008771929824561403,"d":"0.0088"}]
["rpoA",1003,17,5,1020,{"v":0.016666666666666666,"d":"0.0167"},{"v":0.004901960784313725,"d":"0.0049"}]
["rpoB",3196,35,10,3231,{"v":0.010832559579077685,"d":"0.0108"},{"v":0.0030950170225936243,"d":"0.0031"}]
["rpoC1",2027,22,6,2049,{"v":0.010736944851146901,"d":"0.0107"},{"v":0.0029282576866764276,"d":"0.0029"}]
["rpoC2",4352,88,29,4440,{"v":0.01981981981981982,"d":"0.0198"},{"v":0.006531531531531532,"d":"0.0065"}]
["rps2",704,7,4,711,{"v":0.009845288326300985,"d":"0.0098"},{"v":0.005625879043600563,"d":"0.0056"}]
["rps3",710,10,4,720,{"v":0.013888888888888888,"d":"0.0139"},{"v":0.005555555555555556,"d":"0.0056"}]
["rps4",599,7,1,606,{"v":0.01155115511551155,"d":"0.0116"},{"v":0.0016501650165016502,"d":"0.0017"}]
["rps7",466,5,1,471,{"v":0.010615711252653927,"d":"0.0106"},{"v":0.0021231422505307855,"d":"0.0021"}]
["rps8",411,0,0,411,{"v":0,"d":"0.0000"},{"v":0,"d":"0.0000"}]
["rps11",428,4,2,432,{"v":0.009259259259259259,"d":"0.0093"},{"v":0.004629629629629629,"d":"0.0046"}]
["rps12",372,3,2,380,{"v":0.007894736842105263,"d":"0.0079"},{"v":0.005263157894736842,"d":"0.0053"}]
["rps14",308,4,1,312,{"v":0.01282051282051282,"d":"0.0128"},{"v":0.003205128205128205,"d":"0.0032"}]
["rps15",271,2,2,273,{"v":0.007326007326007326,"d":"0.0073"},{"v":0.007326007326007326,"d":"0.0073"}]
["rps16",272,4,1,276,{"v":0.014492753623188406,"d":"0.0145"},{"v":0.0036231884057971015,"d":"0.0036"}]
["rps18",507,6,1,513,{"v":0.011695906432748537,"d":"0.0117"},{"v":0.001949317738791423,"d":"0.0019"}]
["rps19",280,2,0,282,{"v":0.0070921985815602835,"d":"0.0071"},{"v":0,"d":"0.0000"}]
["ycf3",516,3,2,519,{"v":0.005780346820809248,"d":"0.0058"},{"v":0.0038535645472061657,"d":"0.0039"}]
["ycf4",551,7,2,558,{"v":0.012544802867383513,"d":"0.0125"},{"v":0.0035842293906810036,"d":"0.0036"}]
["a: V/T represents the ratio of the number of variable sites to the number of total sites."]
["b: P/T represents the ratio of the number of parsimony informative sites to the number of total sites."]

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